PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00828.1_g00008.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 348aa    MW: 39212.1 Da    PI: 4.2983
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00828.1_g00008.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.11.3e-19126175255
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              +++GVr+++ +g+W+AeIrdp +   ++r +lg+f taeeAa  +++a+ +l+g
  Rsa1.0_00828.1_g00008.1 126 KFRGVRQRP-WGKWAAEIRDPEQ---KRRLWLGTFETAEEAALVYDNAAIRLRG 175
                              89*******.**********732...5*************************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.7E-30125183IPR001471AP2/ERF domain
CDDcd000184.61E-34126182No hitNo description
SuperFamilySSF541711.7E-21126184IPR016177DNA-binding domain
PfamPF008476.9E-13126175IPR001471AP2/ERF domain
PROSITE profilePS5103223.868126183IPR001471AP2/ERF domain
SMARTSM003801.6E-40126189IPR001471AP2/ERF domain
PRINTSPR003673.1E-10127138IPR001471AP2/ERF domain
PRINTSPR003673.1E-10149165IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MDELQEYMDF RPLKYSEHKT SVTKYTKTSP ETRPDSVKIV RVSVTDPYAT DSSSDEDEQE  60
QEDFLFPRRR VRRFVNEIRV EPGRSDTDVA GGVSTKERKR LSSPALASNR RRALKVSTTS  120
GQNGRKFRGV RQRPWGKWAA EIRDPEQKRR LWLGTFETAE EAALVYDNAA IRLRGPDALT  180
NFSVPPEESE PEQSVIVKPE SNITTTTTSC SESTEDFQHV SSPTSVLNLQ SSEEIQQPFK  240
SAKPEPEISD AVWWHTGVSS GSGESDDSFM LDSSFLDNYF NESLPEFSML DQPMGEVFLE  300
NDIFGDAFLD GESMMNIGDD EFTTSSIKDI GSVFSEFDDS LISDLLVV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-22124182362ATERF1
3gcc_A5e-22124182362ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013680636.11e-177PREDICTED: ethylene-responsive transcription factor CRF3-like
RefseqXP_013740378.11e-177PREDICTED: ethylene-responsive transcription factor CRF3-like
SwissprotQ9FK121e-131CRF3_ARATH; Ethylene-responsive transcription factor CRF3
TrEMBLA0A0D3B3P71e-176A0A0D3B3P7_BRAOL; Uncharacterized protein
STRINGBra029079.1-P1e-174(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22292576
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53290.11e-100cytokinin response factor 3